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Visual Analysis in Science and Engineering

Projects People Videos Talks Publications Bibliography


Interactive Multiplots for Regression Testing of Software Programs
Intelligent Tutoring Systems for Physics Majors
JointViewer: Visual Analysis of Orthopaedics Data
The Chinese Room: Machine Translation Visualization
Stress Tensor Exploration for Turbulent Combustion Calculations
GRACE: Geriatric Research in Ambulatory and Cognitive Excellence
Astroshelf: Panning and Zooming the Observable Universe
Mosbie: Exploring Exploring Cell Pathway Rule-Based Model Development over Time


Howard Aizenstein
Joshua Albrecht
Robert Boudreau
Brian Cherinka
Andrew Conn
Peyman Givi
Rebecca Hachey
Md. Abedul Haque
Rebecca Hwa
William Layton
Matthew Liegey
Timothy Luciani
Sriranjani Mandayam
Liz Marai
Adrian Maries
Sean Myers
Jeffrey Newman
Mehdi Nik
Daniel Oliphant
Patrick Pisciuneri
Victor Powell
Caterina Rosano
Zach Sadler
Matthew Seiler
Shiwangi Singh
Adam Smith
Daniel Walker
John Wenskovitch
Kim Wong
Michael Wood-Vasey
S. Levent Yilmaz








J. Aerts, G.E. Marai, K. Nieselt, C. Nielsen, M. Streit, D. Weiskopf, "Highlights from the 5th Symposium on Biological Data Visualization: Part 1", BMC Bioinformatics, Vol. 16(0), pp. 1--2, 2015. (bibtex: Aerts-2015-HFT).
J. Aerts2, G.E. Marai, K. Nieselt, C. Nielsen, M. Streit, D. Weiskopf, "Highlights from the 5th Symposium on Biological Data Visualization: Part 2", BMC Proceedings, Vol. 9(0), pp. 1--2, 2015. (bibtex: Aerts2-2015-HFT).
J. Aurisano, K. Reda, A. Johnson, G.E. Marai, J. Leigh, "BactoGeNIE: A Large-Scale Comparative Genome Visualization for Big Displays", BMC Bioinformatics, Vol. 16(0), pp. 1--13, 2015. (pdf) (bibtex: Aurisano-2015-BAL).

G.E. Marai, "Visual Scaffolding in Integrated Spatial and Nonspatial Visual Analysis", The Sixth International Eurovis workshop on Visual Analytics EuroVA’15, pp. 1--5, 2015. (pdf) (bibtex: Marai-2015-VSI).
A. Maries, T. Luciani, P.H. Pisciuneri, M.B. Nik, S.L. Yilmaz, P. Givi, G.E. Marai, "A Clustering Method for Identifying Regions of Interest in Turbulent Combustion Tensor Fields", Visualization and Processing of Higher Order Descriptors for Multi-Valued Data. Editors: Ingrid Hotz and Thomas Schultz, Springer, pp. 1--18, 2015. In Press. (pdf) (bibtex: Maries-2015-ACM).


M. Hlawitschka, I. Hotz, A. Kratz, G.E. Marai, R. Moreno, G. Scheuermann, M. Stommel, A. Wiebel, E. Zhang, "Top Challenges in the Visualization of Engineering Tensor Fields", Visualization and Processing of Tensors and Higher-Order Descriptors for Multi-field Data, C.F. Westin, B. Burgeth and A. Vilanova (editors), Springer, pp. 1--13, 2014. (pdf) (bibtex: Hlawitschka-2014-TCI).
T. Luciani, B. Cherinka, D. Oliphant, S. Myers, W.M. Wood-Vasey, A. Labrinidis, G.E. Marai, "Large-Scale Overlays and Trends: Visually Mining, Panning and Zooming the Observable Universe", IEEE Transactions on Visualization and Computer Graphics, Vol. 0(7), pp. 1--14, Jul 2014. (pdf) (bibtex: Luciani-2014-LSO).
G.E. Marai, S. O’Donoghue, C. Bartlett and J. Aerts (editors), "BMC Bioinformatics Biological Data Visualization Series", BioMed Central, Vol. 0(0), pp. 1--100, 2014. (bibtex: Marai-2014-BBB).
N. Mays, C. Rosano, H.J. Aizenstein, R. Boudreau, G.E. Marai, A. Maries, W.J. Layton, F. Thomas, K. Yaffe, L.J. Launer. A.B. Newman, "Using iterated Tikhonov regularization with the L-curve method to Quantify the Correlation Between Neuroimaging and Gait Data", Journal of Computer Math, Vol. 0(0), pp. 1--27, 2014. In Review. (pdf) (bibtex: Mays-2014-UIT).
J. Wenskovitch, L.A. Harris, J.J. Tapia, J.R. Faeder, G.E. Marai, "MOSBIE: A Tool for Comparison and Analysis of Rule-Based Biochemical Models", BMC Bioinformatics Journal 15:316, Vol. 15(0), pp. 1--22, 2014. (pdf) (bibtex: Wenskovitch-2014-MAT).



T. Luciani, A. Maries, M. Nik, S.L. Yilmaz, G.E. Marai, "Visualization of Tensor Quantities Used in Computational Turbulent Combustion", 66th Annual Meeting of the APS Division of Fluid Dynamics, pp. 1--1, 2013. (pdf) (bibtex: Luciani-2013-VOT).
A. Maries, N. Mays, M. Olson Hunt, K.F. Wong, W. Layton, R. Boudreau, C. Rosano, G.E. Marai, "GRACE: A Visual Comparison Framework for Integrated Spatial and Non-Spatial Geriatric Data", IEEE Transactions on Visualization and Computer Graphics (Proceedings Scientific Visualization 2013), Vol. 19(12), pp. 1--10, Dec 2013. (pdf) (bibtex: Maries-2013-GAV).

J. Wenskovitch, L. Harris, J. Faeder, G.E. Marai, "A Journaling System for Rule-Based Biochemical Models", IEEE BioVis Posters Compendium, pp. 1--1, 2013. (pdf) (bibtex: Wenskovitch-2013-AJS).



M. Liang, J. Guerra, G.E. Marai, P. Brusilovsky, "Collaborative E-Learning through Open Social Student Modeling and Progressive Zoom Navigation", The 8th IEEE International Conference on Collaborative Computing: Networking, Applications and Worksharing, pp. 1--10, 2012. In Press. (pdf) (bibtex: Liang-2012-CEL).

T. Luciani, A. Maries, H. Tran, M. Nik, S.L. Yilmaz, G.E. Marai, "A Novel Method for Tracking Tensor-based Regions of Interest in Large-Scale, Spatially-Dense Turbulent Combustion Data", IEEE Visualization 2012 Poster Abstracts with System Demonstration, pp. 1--2, Oct 2012. In Press. (pdf) (bibtex: Luciani-2012-ANM).
IEEE LDAV'12 Best-Paper Runner-Up (Honorable Mention)
T. Luciani, B. Cherinka, S. Myers, B. Sun, W.M. Wood-Vassey, A. Labrinidis, G.E. Marai, "Panning and Zooming the Observable Universe with Prefix-Matching Indices and Pixel-Based Overlays", IEEE Visualization 2012, Large-Scale Data Analysis and Visualization Symposium, pp. 1--8, Oct 2012. (pdf) (bibtex: Luciani-2012-PAZ).
A. Maries, Md. A. Haque, S. L. Yilmaz, M. B. Nik, G.E. Marai, "Interactive Exploration of Stress Tensors Used in Computational Turbulent Combustion", New Developments in the Visualization and Processing of Tensor Fields, D. Laidlaw and A. Villanova (editors), Springer, pp. 137--156, 2012. (pdf) (bibtex: Maries-2012-IEO).

P. Neophytou, R. Gheorghiu, R. Hachey, T. Luciani, B. Sun, A. Labrinidis, G.E. Marai, P. K. Chrysanthis, "AstroShelf: Understanding the Universe through Scalable Navigation of a Galaxy of Annotations", SIGMOD 2012 System Demonstrations Compendium, pp. 1--4, May 2012. (pdf) (bibtex: Neophytou-2012-AUT).



T. Luciani, R. Hachey, D.Q. Oliphant, B.A. Cherinka, G.E. Marai, "Pixel-based Overlays for Navigating a Galaxy of Observations", IEEE Visualization 2011, Large-Scale Data Analysis and Visualization Symposium, Poster Abstracts with System Demonstration, pp. 1--2, Oct 2011. (pdf) (bibtex: Luciani-2011-PBO).

A. Maries, S. Mandayam, C. Rosano, G.E. Marai, "Visual Analysis of Brain/Gait Correlations", IEEE Visualization 2011, Poster Abstracts with System Demonstration, pp. 1--2, 2011. (pdf) (bibtex: Maries-2011-VAO).



Md. A. Haque, A. Maries, S.L. Yilmaz, M.B. Nik, G.E. Marai, "Tensor Visualization in Computational Turbulent Combustion: A Case Study", IEEE Visualization 2010, Poster Abstracts with System Demonstration, pp. 1--2, 2010. (pdf) (bibtex: Haque-2010-TVI).

D.Q. Oliphant, B.A. Cherinka, W.M. Wood-Vasey, J.A. Newman, A. Labrinidis, P. Chrysanthis, G.E. Marai, "Navigating a Galaxy of Observations: From Frustration to Innovation", Technical Report TR-2011-02, pp. 0--0, 2010. (pdf) (bibtex: Oliphant-2010-NAG).

D.Q. Oliphant, G.E. Marai, "Real Time Ray Tracing in a Space Limited Environment", Technical Report TR-2011-03, pp. 0--0, 2010. (pdf) (bibtex: Oliphant-2010-RTR).



J. Albrecht, R. Hwa. G. E. Marai, "Correcting Automatic Translations through Collaborations between MT and Monolingual Target-Language Users", EACL 2009, 12th Conference of the European Chapter of the Association for Computational Linguistics, Proceedings of the Conference, pp. 60--68, Mar 2009. (pdf) (bibtex: Albrecht-2009-CAT).
J.S. Albrecht, R. Hwa, G.E. Marai, "The Chinese Room: Visualization and Interaction to Understand and Correct Ambiguous Machine Translation", Computer Graphics Forum (also in 2009 Eurographics/IEEE Symposium on Visualization, Proceedings of), Vol. 28(6), pp. 1047--1054, Jun 2009. (pdf) (bibtex: Albrecht-2009-TCR).

A.M. Smith, J.J. Geiger, G.M. Kapfhammer, M. Renieris, G.E. Marai, "Interactive Coverage Effectiveness Multiplots for Evaluating Prioritized Regression Test Suites", IEEE Visualization 2009 Poster Compendium, pp. 0--0, 2009. (pdf) (bibtex: Smith-2009-ICE).

W. Xiong, D. Litman, G.E. Marai, "Analyzing Prosodic Features and Student Uncertainty using Visualization", AAAI-FSS'09, pp. 0--0, Sep 2009. (pdf) (bibtex: Xiong-2009-APF).



J.S. Albrecht, R. Hwa, G.E. Marai, "The Chinese Room - Understanding and Correcting Machine Translation", IEEE Information Visualization 2008 Poster Abstracts with System Demonstration, pp. 1--2, 2008. (pdf) (bibtex: Albrecht-2008-TCR).


J.J. Crisco, D. Moore, G.E. Marai, D.H. Laidlaw, E. Akelman, A. C. Weiss, S.W. Wolfe, "Effects of Distal Radius Malunion on Distal Radioulnar Joint Mechanics -- An In-Vivo Study", Journal of Orthopedic Research, Vol. 25(1), pp. 547--555, Jan 2007. (pdf) (bibtex: Crisco-2007-EOD).
G.E. Marai, C.M. Grimm, D.H. Laidlaw, "Arthrodial Joint Markerless Cross-Parameterization and Biomechanical Visualization", IEEE Transactions on Visualization and Computer Graphics, Vol. 13(9), pp. 1095--1104, Sep 2007. (pdf) (bibtex: Marai-2007-AJM).
G.E. Marai, "Data-driven Predictive Modeling of Diarthrodial Joints", Ph.D. Dissertation, Brown University, Vol. 0(5), pp. 0--0, May 2007. (pdf) (bibtex: Marai-2007-DDP).



G.E. Marai, D.H. Laidlaw, "Markerless inter-subject bone shape matching using 2D projections", MICCAI 2005 short papers, pp. 0--0, 2005. (pdf) (bibtex: Marai-2005-MIS).



G. E. Marai, C. Demiralp, S. Andrews, D. H. Laidlaw, "JointViewer -- an interactive system for exploring orthopedic data", IEEE Visualization 2004 Poster Compendium, pp. 0--0, 2004. (pdf) (bibtex: Marai-2004-JAI).



J.J. Crisco, G.E. Marai, D.H. Laidlaw, D. Moore, E. Akelman, "Kinematic and mechanical changes in the distal radioulnar joint (druj) of patients with malunited distal radius fractures", 49th Annual Meeting of the Orthopaedic Research Society, pp. 0--0, 2003. (pdf) (bibtex: Crisco-2003-KAM).
G.E. Marai, D.H. Laidlaw, C. Demiralp, S. Andrews, C.M. Grimm, J.J. Crisco, "Estimating Joint Contact Areas and Ligament Lengths from Bone Kinematics and Surfaces", IEEE Transactions on Biomedical Engineering, Vol. 51(5), pp. 790--799, May 2003. (pdf) (bibtex: Marai-2003-EJC).



G.E. Marai, D.H. Laidlaw, C. Demiralp, C. Grimm, J.J. Crisco, D. Moore, A.E. Akelman, "Contact Areas and Ligament Lengths are Abnormal in Patients with Malunited Distal Radius Fracture Despite Normal Radioulnar Kinematics", 4th World Congress Biomechanics, pp. 0--0, Aug 2002. (pdf) (bibtex: Marai-2002-CAA).
G.E. Marai, C. Demiralp, S. Andrews, D.H. Laidlaw, C. Grimm, J.J. Crisco, "Visualization of Contact Areas and Ligament Paths in Joints", Technical Report CS-02-15, Brown University Computer Science Department, Vol. 0(8), pp. 0--0, Aug 2002. (pdf) (bibtex: Marai-2002-VOC).


C. Demiralp, G.E. Marai, S. Andrews, D.H. Laidlaw, J.J. Crisco, C. Grimm, "Modeling and Visualization of Inter-Bone Distances in Joints", IEEE Visualization 2001, Work in Progress Proc., Vol. 0(0), pp. 0--0, 2001. (pdf) (bibtex: Demiralp-2001-MAV).