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Lab Home |
2015 |
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| J. Aerts, G.E. Marai, K. Nieselt, C. Nielsen, M. Streit, D. Weiskopf, "Highlights from the 5th Symposium on Biological Data Visualization: Part 1", BMC Bioinformatics, Vol. 16(0), pp. 1--2, 2015. (bibtex: Aerts-2015-HFT). |
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| J. Aerts2, G.E. Marai, K. Nieselt, C. Nielsen, M. Streit, D. Weiskopf, "Highlights from the 5th Symposium on Biological Data Visualization: Part 2", BMC Proceedings, Vol. 9(0), pp. 1--2, 2015. (bibtex: Aerts2-2015-HFT). |
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| J. Aurisano, K. Reda, A. Johnson, G.E. Marai, J. Leigh, "BactoGeNIE: A Large-Scale Comparative Genome Visualization for Big Displays", BMC Bioinformatics, Vol. 16(0), pp. 1--13, 2015. (pdf) (bibtex: Aurisano-2015-BAL). |
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| G.E. Marai, "Visual Scaffolding in Integrated Spatial and Nonspatial Visual Analysis", The Sixth International Eurovis workshop on Visual Analytics EuroVA’15, pp. 1--5, 2015. (pdf) (bibtex: Marai-2015-VSI). |
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| A. Maries, T. Luciani, P.H. Pisciuneri, M.B. Nik, S.L. Yilmaz, P. Givi, G.E. Marai, "A Clustering Method for Identifying Regions of Interest in Turbulent Combustion Tensor Fields", Visualization and Processing of Higher Order Descriptors for Multi-Valued Data. Editors: Ingrid Hotz and Thomas Schultz, Springer, pp. 1--18, 2015. In Press. (pdf) (bibtex: Maries-2015-ACM). |
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2014 |
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| M. Hlawitschka, I. Hotz, A. Kratz, G.E. Marai, R. Moreno, G. Scheuermann, M. Stommel, A. Wiebel, E. Zhang, "Top Challenges in the Visualization of Engineering Tensor Fields", Visualization and Processing of Tensors and Higher-Order Descriptors for Multi-field Data, C.F. Westin, B. Burgeth and A. Vilanova (editors), Springer, pp. 1--13, 2014. (pdf) (bibtex: Hlawitschka-2014-TCI). |
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| T. Luciani, J. Wenskovitch, K. Chen, D. Koes, T. Travers, G.E. Marai, "FixingTIM: Interactive Exploration of Sequence and Structural Data to Identify Functional Mutations in Protein Families", BMC Proceedings 2014, 8(Suppl 2):S3, Vol. 0(8), pp. 1--9, Aug 2014. (pdf) (bibtex: Luciani-2014-FIE). |
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| T. Luciani, B. Cherinka, D. Oliphant, S. Myers, W.M. Wood-Vasey, A. Labrinidis, G.E. Marai, "Large-Scale Overlays and Trends: Visually Mining, Panning and Zooming the Observable Universe", IEEE Transactions on Visualization and Computer Graphics, Vol. 0(7), pp. 1--14, Jul 2014. (pdf) (bibtex: Luciani-2014-LSO). |
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| G.E. Marai, S. O’Donoghue, C. Bartlett and J. Aerts (editors), "BMC Bioinformatics Biological Data Visualization Series", BioMed Central, Vol. 0(0), pp. 1--100, 2014. (bibtex: Marai-2014-BBB). |
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| N. Mays, C. Rosano, H.J. Aizenstein, R. Boudreau, G.E. Marai, A. Maries, W.J. Layton, F. Thomas, K. Yaffe, L.J. Launer. A.B. Newman, "Using iterated Tikhonov regularization with the L-curve method to Quantify the Correlation Between Neuroimaging and Gait Data", Journal of Computer Math, Vol. 0(0), pp. 1--27, 2014. In Review. (pdf) (bibtex: Mays-2014-UIT). |
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| J. Wenskovitch, L.A. Harris, J.J. Tapia, J.R. Faeder, G.E. Marai, "MOSBIE: A Tool for Comparison and Analysis of Rule-Based Biochemical Models", BMC Bioinformatics Journal 15:316, Vol. 15(0), pp. 1--22, 2014. (pdf) (bibtex: Wenskovitch-2014-MAT). |
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2013 |
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| Md. A. Haque, G. E. Marai, "A Semi-Automated Method for Subject-Specific Modeling of the Spinal Canal from Computed Tomography Images and Dynamic Radiographs", The 18th International Workshop on Vision, Modeling and Visualization, pp. 1--8, Sep 2013. (pdf) (bibtex: Haque-2013-ASA). |
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| Md. A. Haque, W. Anderst, S. Tashman, G.E. Marai, "Hierarchical Model-based Tracking of Cervical Vertebrae from Dynamic Biplane Radiographs", Journal of Medical Engineering and Physics, Vol. 35(7), pp. 994--1004, Jul 2013. (pdf) (bibtex: Haque-2013-HMB). |
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| Md. A. Haque, G. E. Marai, "Image to Mesh: Spinal Ligament 3D Surface Models from Bone Volume Images and Dynamic Radiographs", MeshMed: Workshop on Mesh Processing in Medical Imaging, Medical Image Computing and Computer Assisted Intervention (MICCAI) 2013, pp. 1--12, Sep 2013. (pdf) (bibtex: Haque-2013-ITM). |
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| T. Luciani, A. Maries, M. Nik, S.L. Yilmaz, G.E. Marai, "Visualization of Tensor Quantities Used in Computational Turbulent Combustion", 66th Annual Meeting of the APS Division of Fluid Dynamics, pp. 1--1, 2013. (pdf) (bibtex: Luciani-2013-VOT). |
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| A. Maries, N. Mays, M. Olson Hunt, K.F. Wong, W. Layton, R. Boudreau, C. Rosano, G.E. Marai, "GRACE: A Visual Comparison Framework for Integrated Spatial and Non-Spatial Geriatric Data", IEEE Transactions on Visualization and Computer Graphics (Proceedings Scientific Visualization 2013), Vol. 19(12), pp. 1--10, Dec 2013. (pdf) (bibtex: Maries-2013-GAV). |
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| J. Wenskovitch, L. Harris, J. Faeder, G.E. Marai, "A Journaling System for Rule-Based Biochemical Models", IEEE BioVis Posters Compendium, pp. 1--1, 2013. (pdf) (bibtex: Wenskovitch-2013-AJS). |
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| IEEE BioVis'13 Data Contest Visualization Award J. Wenskovitch, T. Luciani, K. Chen, G.E. Marai, "Fixing TIM: Identifying Functional Mutations in Protein Families through the Interactive Exploration of Sequence and Structural Data", IEEE BioVis 2013 Data Competition, pp. 1--4, 2013. (pdf) (bibtex: Wenskovitch-2013-FTI). |
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2012 |
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| Md. Abedul Haque, "A Dynamic-Image Framework for Geometric Modeling, Simulation and Analysis of Human Joints", IEEE Visweek 2012 Doctoral Colloquium, Pitt CS Technical Report, pp. 1--4, 2012. (pdf) (bibtex: Haque-2012-ADI). |
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| Md. A. Haque, W. Anderst, S. Tashman, G.E. Marai, "Validation of a Non-invasive Automated Hierarchical Method to Precisely Measure Lumbar Spine Movement", The 2012 Annual Meeting of the Orthopaedic Research Society, pp. 1--1, Feb 2012. (pdf) (bibtex: Haque-2012-VOA). |
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| M. Liang, J. Guerra, G.E. Marai, P. Brusilovsky, "Collaborative E-Learning through Open Social Student Modeling and Progressive Zoom Navigation", The 8th IEEE International Conference on Collaborative Computing: Networking, Applications and Worksharing, pp. 1--10, 2012. In Press. (pdf) (bibtex: Liang-2012-CEL). |
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| T. Luciani, A. Maries, H. Tran, M. Nik, S.L. Yilmaz, G.E. Marai, "A Novel Method for Tracking Tensor-based Regions of Interest in Large-Scale, Spatially-Dense Turbulent Combustion Data", IEEE Visualization 2012 Poster Abstracts with System Demonstration, pp. 1--2, Oct 2012. In Press. (pdf) (bibtex: Luciani-2012-ANM). |
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| IEEE LDAV'12 Best-Paper Runner-Up (Honorable Mention) T. Luciani, B. Cherinka, S. Myers, B. Sun, W.M. Wood-Vassey, A. Labrinidis, G.E. Marai, "Panning and Zooming the Observable Universe with Prefix-Matching Indices and Pixel-Based Overlays", IEEE Visualization 2012, Large-Scale Data Analysis and Visualization Symposium, pp. 1--8, Oct 2012. (pdf) (bibtex: Luciani-2012-PAZ). |
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| A. Maries, Md. A. Haque, S. L. Yilmaz, M. B. Nik, G.E. Marai, "Interactive Exploration of Stress Tensors Used in Computational Turbulent Combustion", New Developments in the Visualization and Processing of Tensor Fields, D. Laidlaw and A. Villanova (editors), Springer, pp. 137--156, 2012. (pdf) (bibtex: Maries-2012-IEO). |
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| P. Neophytou, R. Gheorghiu, R. Hachey, T. Luciani, B. Sun, A. Labrinidis, G.E. Marai, P. K. Chrysanthis, "AstroShelf: Understanding the Universe through Scalable Navigation of a Galaxy of Annotations", SIGMOD 2012 System Demonstrations Compendium, pp. 1--4, May 2012. (pdf) (bibtex: Neophytou-2012-AUT). |
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| A. M. Smith, "INTEGRATED MODELING, SIMULATION, AND VISUALIZATION FOR RULE-BASED INTRACELLULAR BIOCHEMISTRY", Master's Thesis, Vol. 0(4), pp. 0--0, Apr 2012. (pdf) (bibtex: Smith-2012-IMS). |
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| A.M. Smith, W. Xu, Y. Sun, J.R. Faeder, G.E. Marai, "RuleBender: Integrated Modeling, Simulation and Visualization for Rule-Based Intracellular Biochemistry", BMC Journal of Bioinformatics, Vol. 13(6), pp. 1--16, Jun 2012. (pdf) (bibtex: Smith-2012-RIM). |
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2011 |
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| T. Luciani, R. Hachey, D.Q. Oliphant, B.A. Cherinka, G.E. Marai, "Pixel-based Overlays for Navigating a Galaxy of Observations", IEEE Visualization 2011, Large-Scale Data Analysis and Visualization Symposium, Poster Abstracts with System Demonstration, pp. 1--2, Oct 2011. (pdf) (bibtex: Luciani-2011-PBO). |
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| A. Maries, S. Mandayam, C. Rosano, G.E. Marai, "Visual Analysis of Brain/Gait Correlations", IEEE Visualization 2011, Poster Abstracts with System Demonstration, pp. 1--2, 2011. (pdf) (bibtex: Maries-2011-VAO). |
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| S.D. Rothenberger, J.E. Wenskovitch, G.E. Marai, "Pexel and Heatmap Visual Analysis of Multidimensional Gun/Homicide Data", IEEE Visualization 2011, Visual Analytics Science and Technology (VAST) Conference, Poster Abstracts with System Demonstration, pp. 1--2, Oct 2011. (pdf) (bibtex: Rothenberger-2011-PAH). |
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| IEEE BioVis'11 Best Paper Award A.M. Smith, W. Xu, Y. Sun, J.R. Faeder, G.E. Marai, "RuleBender: Integrated Visualization for Biochemical Rule-Based Modeling", IEEE Visualization 2011, IEEE BioVIs: Symposium on Biological Data Visualization, pp. 1--8, Oct 2011. (pdf) (bibtex: Smith-2011-RIV). |
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| A. Smith, W. Xu, J.R. Faeder, G.E. Marai, "Scalable Global Views for Biological Rule-Based Modeling", IEEE Visualization 2011, Information Visualization, Poster Abstracts with System Demonstration, pp. 1--2, Oct 2011. (pdf) (bibtex: Smith-2011-SGV). |
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| W. Xu, A. Smith, J.R. Faeder, G.E. Marai, "RuleBender: A Visual Interface for Rule-Based Modeling", Bioinformatics Journal, Vol. 27(4), pp. 1721--2, Apr 2011. (pdf) (bibtex: Xu-2011-RAV). |
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2010 |
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| A.M. Smith, W. Xu, Y. Sun, J.R. Faeder, G.E. Marai, "Visual Tools for Modeling and Simulation of Cell Signaling Networks ", Carnegie Mellon University Bioimaging Informatics Symposium, pp. 1--1, Sep 2010. (pdf) (bibtex: A.M. Smith-2010-VTF). |
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| Md. A. Haque, A. Maries, S.L. Yilmaz, M.B. Nik, G.E. Marai, "Tensor Visualization in Computational Turbulent Combustion: A Case Study", IEEE Visualization 2010, Poster Abstracts with System Demonstration, pp. 1--2, 2010. (pdf) (bibtex: Haque-2010-TVI). |
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| D.Q. Oliphant, B.A. Cherinka, W.M. Wood-Vasey, J.A. Newman, A. Labrinidis, P. Chrysanthis, G.E. Marai, "Navigating a Galaxy of Observations: From Frustration to Innovation", Technical Report TR-2011-02, pp. 0--0, 2010. (pdf) (bibtex: Oliphant-2010-NAG). |
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| D.Q. Oliphant, G.E. Marai, "Real Time Ray Tracing in a Space Limited Environment", Technical Report TR-2011-03, pp. 0--0, 2010. (pdf) (bibtex: Oliphant-2010-RTR). |
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2009 |
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| J. Albrecht, R. Hwa. G. E. Marai, "Correcting Automatic Translations through Collaborations between MT and Monolingual Target-Language Users", EACL 2009, 12th Conference of the European Chapter of the Association for Computational Linguistics, Proceedings of the Conference, pp. 60--68, Mar 2009. (pdf) (bibtex: Albrecht-2009-CAT). |
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| J.S. Albrecht, R. Hwa, G.E. Marai, "The Chinese Room: Visualization and Interaction to Understand and Correct Ambiguous Machine Translation", Computer Graphics Forum (also in 2009 Eurographics/IEEE Symposium on Visualization, Proceedings of), Vol. 28(6), pp. 1047--1054, Jun 2009. (pdf) (bibtex: Albrecht-2009-TCR). |
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| G.E. Marai, J.J. Crisco, D.H. Laidlaw, "Development of a Kinematic 3D Carpal Model to Analyze In Vivo Soft-Tissue Interaction Across Multiple Static Postures", The 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'09), pp. 0--0, Sep 2009. (pdf) (bibtex: Marai-2009-DOA). |
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| G.E. Marai, J.J. Crisco, D.H. Laidlaw, "Estimation of Optimal Carpal Contact in the Human Wrist from Multiple Static Articulation Postures", BMES (Biomedical Engineering Society) 2009 Annual Fall Scientific Meeting, pp. 0--0, Oct 2009. (pdf) (bibtex: Marai-2009-EOO). |
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| G.E. Marai, "MyWorld4D: Introduction to Computer Graphics with a Modeling and Simulation Twist", ACM SIGGRAPH 2009 Education track, pp. 0--0, Aug 2009. (pdf) (bibtex: Marai-2009-MIT). |
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| A.M. Smith, J.J. Geiger, G.M. Kapfhammer, M. Renieris, G.E. Marai, "Interactive Coverage Effectiveness Multiplots for Evaluating Prioritized Regression Test Suites", IEEE Visualization 2009 Poster Compendium, pp. 0--0, 2009. (pdf) (bibtex: Smith-2009-ICE). |
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| W. Xiong, D. Litman, G.E. Marai, "Analyzing Prosodic Features and Student Uncertainty using Visualization", AAAI-FSS'09, pp. 0--0, Sep 2009. (pdf) (bibtex: Xiong-2009-APF). |
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2008 |
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| J.S. Albrecht, R. Hwa, G.E. Marai, "The Chinese Room - Understanding and Correcting Machine Translation", IEEE Information Visualization 2008 Poster Abstracts with System Demonstration, pp. 1--2, 2008. (pdf) (bibtex: Albrecht-2008-TCR). |
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| G.E. Marai, J.J. Crisco, D.H. Laidlaw, "A Kinematics-Based Method for Evaluating the Stabilizing Role of Ligaments in the Carpal Joint", 16th Annual Symposium on Computational Methods in Orthopaedic Biomechanics, pp. 0--0, Mar 2008. (pdf) (bibtex: Marai-2008-AKB). |
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2007 |
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| J.J. Crisco, D. Moore, G.E. Marai, D.H. Laidlaw, E. Akelman, A. C. Weiss, S.W. Wolfe, "Effects of Distal Radius Malunion on Distal Radioulnar Joint Mechanics -- An In-Vivo Study", Journal of Orthopedic Research, Vol. 25(1), pp. 547--555, Jan 2007. (pdf) (bibtex: Crisco-2007-EOD). |
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| G.E. Marai, C.M. Grimm, D.H. Laidlaw, "Arthrodial Joint Markerless Cross-Parameterization and Biomechanical Visualization", IEEE Transactions on Visualization and Computer Graphics, Vol. 13(9), pp. 1095--1104, Sep 2007. (pdf) (bibtex: Marai-2007-AJM). |
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| G.E. Marai, "Data-driven Predictive Modeling of Diarthrodial Joints", Ph.D. Dissertation, Brown University, Vol. 0(5), pp. 0--0, May 2007. (pdf) (bibtex: Marai-2007-DDP). |
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2006 |
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| G.E. Marai, J.J. Crisco, D.H. Laidlaw, "A Kinematics-Based Method for Generating Cartilage Maps and Deformations in the Multi-Articulating Wrist Joint From CT Images", IEEE 2006 Conference of the Engineering in Medicine and Biology Society (EMBC'06), pp. 2079--2082, Sep 2006. (pdf) (bibtex: Marai-2006-AKB). |
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| G.E. Marai, D.H. Laidlaw, J.J. Crisco, "Super-Resolution Registration Using Tissue-Classified Distance Fields", IEEE Transactions on Medical Imaging, Vol. 25(2), pp. 177--187, Feb 2006. (pdf) (bibtex: Marai-2006-SRR). |
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2005 |
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| G.E. Marai, D.H. Laidlaw, "Markerless inter-subject bone shape matching using 2D projections", MICCAI 2005 short papers, pp. 0--0, 2005. (pdf) (bibtex: Marai-2005-MIS). |
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2004 |
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| E. Bromberg, A. Jonsson, G.E. Marai, M. McGuire, "Hybrid Billboard Clouds for Model Simplification", ACM SIGGRAPH 2004 Poster Compendium, pp. 0--0, 2004. (pdf) (bibtex: Bromberg-2004-HBC). |
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| G. E. Marai, C. Demiralp, S. Andrews, D. H. Laidlaw, "JointViewer -- an interactive system for exploring orthopedic data", IEEE Visualization 2004 Poster Compendium, pp. 0--0, 2004. (pdf) (bibtex: Marai-2004-JAI). |
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| P. Sibley, P. Montgomery, G.E. Marai, "Wang Cubes for Video Synthesis and Geometry Placement", ACM SIGGRAPH 2004 Poster Compendium, pp. 0--0, 2004. (pdf) (bibtex: Sibley-2004-WCF). |
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2003 |
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| J.J. Crisco, G.E. Marai, D.H. Laidlaw, D. Moore, E. Akelman, "Kinematic and mechanical changes in the distal radioulnar joint (druj) of patients with malunited distal radius fractures", 49th Annual Meeting of the Orthopaedic Research Society, pp. 0--0, 2003. (pdf) (bibtex: Crisco-2003-KAM). |
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| G.E. Marai, D.H. Laidlaw, J.J. Coburn, M.A. Upal, J.J. Crisco, "A 3D Method for Segmenting and Registering Carpal Bones from CT Volume Images", Annual Meeting of the American Society of Biomechanics, pp. 0--0, 2003. (pdf) (bibtex: Marai-2003-A3M). |
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| G.E. Marai, D.H. Laidlaw, C. Demiralp, S. Andrews, C.M. Grimm, J.J. Crisco, "Estimating Joint Contact Areas and Ligament Lengths from Bone Kinematics and Surfaces", IEEE Transactions on Biomedical Engineering, Vol. 51(5), pp. 790--799, May 2003. (pdf) (bibtex: Marai-2003-EJC). |
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2002 |
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| G.E. Marai, D.H. Laidlaw, C. Demiralp, C. Grimm, J.J. Crisco, D. Moore, A.E. Akelman, "Contact Areas and Ligament Lengths are Abnormal in Patients with Malunited Distal Radius Fracture Despite Normal Radioulnar Kinematics", 4th World Congress Biomechanics, pp. 0--0, Aug 2002. (pdf) (bibtex: Marai-2002-CAA). |
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| G.E. Marai, C. Demiralp, S. Andrews, D.H. Laidlaw, C. Grimm, J.J. Crisco, "Visualization of Contact Areas and Ligament Paths in Joints", Technical Report CS-02-15, Brown University Computer Science Department, Vol. 0(8), pp. 0--0, Aug 2002. (pdf) (bibtex: Marai-2002-VOC). |
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2001 |
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| C. Demiralp, G.E. Marai, S. Andrews, D.H. Laidlaw, J.J. Crisco, C. Grimm, "Modeling and Visualization of Inter-Bone Distances in Joints", IEEE Visualization 2001, Work in Progress Proc., Vol. 0(0), pp. 0--0, 2001. (pdf) (bibtex: Demiralp-2001-MAV). |
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1998 |
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| G.E. Marai, "Geometry Compression of DirectX Files", Technical Report 322/98, Philips Research (company-restricted distribution)., Vol. 0(9), pp. 0--0, Sep 1998. (bibtex: Marai-1998-GCO). |
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| G.E. Marai, "KQML - Communication among Intelligent Agent Systems", M.S. dissertation, Politehnica University of Bucharest (in Romanian), Vol. 0(6), pp. 0--0, Jun 1998. (bibtex: Marai-1998-KCA). |
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1997 |
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| G.E. Marai, "Time-delay Neural Network System for Speech Recognition", Politehnica University of Bucharest, pp. 0--0, Jul 1997. (bibtex: Marai-1997-TDN). |
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1996 |
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| G.E. Marai, A. Ivan, "Neural Networks versus Fuzzy Logic", Politehnica Bioengineering Scientific Session (in Romanian), Vol. 0(5), pp. 0--0, May 1996. (bibtex: Marai-1996-NNV). |
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