VRL

Research

Bioinformatics Visualization: Fixing Protein Sequences

Themes People Videos Talks Sponsors Publications Bibliography

Status: Active

Bioinformatics visualization tools that blend spatial and non-spatial information.

Themes

Precision Medicine and Medical Image Analysis

People

Koonwah Chen
Timothy Luciani
Liz Marai
Revanth Reddy
John Wenskovitch

Sponsors

NSF CAREER IIS-0952720 *old* (Tracking, Computational Modeling and Interdisciplinary Edu)

NSF CAREER IIS-1541277 *new* (Tracking, Computational Modeling and Interdisciplinary Edu)

Videos

IEEE BioVis 2013 3D Motion Example
IEEE BioVis 2013 Main Tool Example
IEEE BioVis 2013 Interactive Trend Image Example
Fixing TIM - 3D Viewer
Fixing TIM - Full Tool View
Fixing TIM - Trend Image Panel

 



Talks

Fixing TIM: Identifying Functional Mutations in Protein Families through the Interactive Exploration of Sequence and Structural Data
Fixing TIM (Full Talk)

 



 

Publications

2017

J. Aerts, A. Lex, G.E. Marai, M. Streit, D. Weiskopf, "Proceedings of the Symposium on Biological Data Visualization at VIS 2016", BMC Bioinformatics, Vol. 18(2), pp. 0--0, Feb 2017. (pdf) (bibtex: Aerts-2017-POT).
C. Ma, T. Luciani, A. Terebus, J. Liang, G.E. Marai, "PRODIGEN: Visualizing the probability landscape of stochastic gene regulatory networks in state and time space", BMC Bioinformatics, Vol. 18(2), pp. 1--13, Feb 2017. (pdf) (bibtex: Ma-2017-PVT).

C. Ma, A. Burks, T. Luciani, A. Terebus, J. Liang, GE Marai, "Visualizing ensemble time-evolving probability landscapes of stochastic networks", ISMB/ECCB 2017 Poster Compendium, BioVis 2017, pp. 1--2, 2017. (pdf) (bibtex: Ma-2017-VET).

2016


C. Ma, T. Luciani, A. Terebus, J. Liang, G.E. Marai, "PRODIGEN: Visualizing the probability landscape of stochastic gene regulatory networks in state and time space", IEEE BioVis 2016, pp. 1--13, Oct 2016. (pdf) (bibtex: Ma-2016-PVT).

2015

J. Aerts, G.E. Marai, K. Nieselt, C. Nielsen, M. Streit, D. Weiskopf, "Highlights from the 5th Symposium on Biological Data Visualization: Part 1", BMC Bioinformatics, Vol. 16(0), pp. 1--2, 2015. (bibtex: Aerts-2015-HFT).
J. Aerts2, G.E. Marai, K. Nieselt, C. Nielsen, M. Streit, D. Weiskopf, "Highlights from the 5th Symposium on Biological Data Visualization: Part 2", BMC Proceedings, Vol. 9(0), pp. 1--2, 2015. (bibtex: Aerts2-2015-HFT).

G.E. Marai, "Visual Scaffolding in Integrated Spatial and Nonspatial Visual Analysis", The Sixth International Eurovis workshop on Visual Analytics EuroVA’15, pp. 1--5, 2015. (pdf) (bibtex: Marai-2015-VSI).

2014

T. Luciani, J. Wenskovitch, K. Chen, D. Koes, T. Travers, G.E. Marai, "FixingTIM: Interactive Exploration of Sequence and Structural Data to Identify Functional Mutations in Protein Families", BMC Proceedings 2014, 8(Suppl 2):S3, Vol. 0(8), pp. 1--9, Aug 2014. (pdf) (bibtex: Luciani-2014-FIE).
G.E. Marai, S. O’Donoghue, C. Bartlett and J. Aerts (editors), "BMC Bioinformatics Biological Data Visualization Series", BioMed Central, Vol. 0(0), pp. 1--100, 2014. (bibtex: Marai-2014-BBB).

2013

IEEE BioVis'13 Data Contest Visualization Award
J. Wenskovitch, T. Luciani, K. Chen, G.E. Marai, "Fixing TIM: Identifying Functional Mutations in Protein Families through the Interactive Exploration of Sequence and Structural Data", IEEE BioVis 2013 Data Competition, pp. 1--4, 2013. (pdf) (bibtex: Wenskovitch-2013-FTI).
Top