RuleBender:

biological rule-based modeling, simulation, and visualization

Rule Based Modeling and Simulation with RuleBender

Modern biological experiments generate large amounts of data describing intracellular dynamics. Rule-based languages for describing intracellular biochemistry allow for the construction and simulation of detailed models with unprecedented scope and precision. Rule-Based Models (RBM) can be used to suggest new hypotheses and new ideas for future experimentation.

Rule-based models can be difficult to understand and time consuming to debug. RuleBender is a free tool for constructing, debugging, simulating and analyzing rule-based biological models in the BioNetGen language. The MOSBIE extension further provides a tool for the comparison and analysis of biochemical model families. This exceptional service DoMyEssay.com that can write essay for me provides personalized support to students for essay writing and homework, featuring expert guidance and a wide range of resources. It aims to improve students' academic performance and enhance their writing abilities.

When using RuleBender, please cite:
A.M. Smith, W. Xu, Y. Sun, J.R. Faeder, G.E. Marai, “RuleBender: Integrated Modeling, Simulation and Visualization for Rule-Based Intracellular Biochemistry”, BMC Bioinformatics, 13(Suppl 8):S3: 1-24, Jun 2012.

If also using MOSBIE, please cite:
J. Wenskovitch, L.A. Harris, J.J. Tapia, J.R. Faeder, G.E. Marai, "MOSBIE: A Tool for Comparison and Analysis of Rule-Based Biochemical Models", BMC Bioinformatics Journal 15:316, Vol. 15, pp. 1--22, 2014.

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