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Brain Visualization

Author: Adrian Maries

R. W. Cox, "AFNI: Software for Analysis and Visualization of Functional Magnetic Resonance Neuroimages", Computers and Biomedical Research, Vol. 0(0), pp. 0--0, 1996. (pdf) (bibtex: Cox-1996-ASF).
I. D. Dinov, D. Valentino, B. C. Shin, F. Konstantinidis, G. Hu, A. MacKenzie-Graham, E.-F. Lee, D. Shattuck, J. Ma, C. Schwartz, A. W. Toga, "LONI Visualization Environment", Journal of Digital Imaging, Vol. 0(0), pp. 0--0, 2006. (pdf) (bibtex: Dinov-2006-LVE).
R. Goebel, F. Esposito, E. Formisano, "Analysis of Functional Image Analysis Contest (FIAC) Data with BrainVoyager QX: From Single-Subject to Cortically Aligned Group General Linear Model Analysis and Self-Organizing Group Independent Comp", Human Brain Mapping, Vol. 0(0), pp. 0--0, 2006. (pdf) (bibtex: Goebel-2006-AOF).
S. Gold, B. Christian, S. Arndt, G. Zeien, T. Cizadlo, D. L. Johnson, M. Flaum, N. C. Andreasen, "Functional MRI Statistical Software Packages: A Comparative Analysis", Human Brain Mapping, Vol. 0(0), pp. 0--0, 1998. (pdf) (bibtex: Gold-1998-FMS).
A. Konig, H. Doleisch, E. Groller, "Multiple Views and Magic Mirrors - fMRI Visualization of the Human Brain", Technical Report, Vol. 0(0), pp. 0--0, 1998. (pdf) (bibtex: Konig-1998-MVA).
P. Malloy, S. Correia, G. Stebbins, D. H. Laidlaw, "Neuroimaging of white matter in aging and dementia", The Clinical Neuropsychologist, Vol. 0(0), pp. 0--0, 2007. (pdf) (bibtex: Malloy-2007-NOW).
S. Mikula, J. M. Stone, E. G. Jones, "BrainMaps.org - Interactive High-Resolution Digital Brain Atlases and Virtual Microscopy", Brains Minds Media, Vol. 0(0), pp. 0--0, 2008. (pdf) (bibtex: Mikula-2008-BIH).
E. B. Moore, A. V. Poliakov, P. Lincoln, J. F. Brinkley, "MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data", BMC Bioinformatics, Vol. 0(0), pp. 0--0, 2007. (pdf) (bibtex: Moore-2007-MAP).

K. Mueller, T. Welsh, W. Zhu, J. Meade, N. Volkow, "BrainMiner: A Visualization Tool for ROI-Based Discovery of Functional Relationships in the Human Brain", Proceedings of the New Paradigms in Information Visualization and Manipulation, pp. 0--0, 2000. (pdf) (bibtex: Mueller-2000-BAV).
F. Å. Nielsen, "Neuroinformatics in Functional Neuroimaging", PhD Thesis, Technical University of Denmark, pp. 0--0, 2002. (pdf) (bibtex: Nielsen-2002-NIF).
F. Å. Nielsen, "Visualizing data mining results with the Brede tools", Frontiers in Neuroinformatics, Vol. 0(0), pp. 0--0, 2009. (pdf) (bibtex: Nielsen-2009-VDM).
W. L. Nowinski, D. Belov, "The Cerefy Neuroradiology Atlas: a Talairach–Tournoux atlas-based tool for analysis of neuroimages available over the Internet", NeuroImage, Vol. 0(0), pp. 0--0, 2003. (pdf) (bibtex: Nowinski-2003-TCN).

S. Pieper, M. Halle, R. Kikinis, "3D Slicer", IEEE International Symposium on Biomedical Imaging, pp. 0--0, 2004. (pdf) (bibtex: Pieper-2004-3S).
A. V. Poliakov, E. M. Albright, K. P. Hinshaw, D. P. Corina, G. Ojemann, R. F. Martin, J. F. Brinkley, "Server-based Approach to Web Visualization of Integrated Three-dimensional Brain Imaging Data", Journal of the American Medical Informatics Association, Vol. 0(0), pp. 0--0, 2005. (pdf) (bibtex: Poliakov-2005-SBA).
M. Seppa, M. Hamalainen, "Visualizing human brain surface from T1-weighted MR images using texture-mapped triangle meshes", NeuroImage, Vol. 0(0), pp. 0--0, 2005. (pdf) (bibtex: Seppa-2005-VHB).

M. E. Shenton, R. Kikinis, W. McCarley, P. Saiviroonporn, H. H. Hokama, A. Robatino, D. Metcalf, C. G. Wible, C. M. Portas, D. V. Iosifescu, R. Donnino, J. M. Goldstein, F. A. Jolesz, "Harvard Brain Atlas: A Teaching and Visualization Tool", Proceedings of the 1995 Biomedical Visualization, pp. 0--0, 1995. (pdf) (bibtex: Shenton-1995-HBA).
S. M. Smith, M. Jenkinson, M. W. Woolrich, C. F. Beckmann, T. E. J. Behrens, H. Johansen-Berg, P. R. Bannister, M. De Luca, I. Drobnjak, D. E. Flitney, R. K. Niazy, J. Saunders, J. Vickers, Y. Zhang,, "Advances in functional and structural MR image analysis and implementation as FSL", NeuroImage, Vol. 0(0), pp. 0--0, 2004. (pdf) (bibtex: Smith-2004-AIF).

M. Tory, T. Möller, M. S. Atkins, "Visualization of Time-Varying MRI Data for MS Lesion Analysis", SPIE International Symposium on Medical Imaging, pp. 0--0, 2001. (pdf) (bibtex: Tory-2001-VOT).

M. Xiao, J. Soh, T. Do, O. Meruvia-Pastor, C. W. Sensen, "Concurrent Visualization of and Mapping between 2D and 3D Medical Images for Disease Pattern Analysis", IAPR International Conference on Pattern Recognition in Bioinformatics, pp. 0--0, 2010. (pdf) (bibtex: Xiao-2010-CVO).